Flagship Inn

The Flagship Inn offers comfortable, affordable accommodations within easy walking distance of Boothbay Harbor’s town center and waterfront. Open year-round, this welcoming hotel provides a convenient home base for exploring the harbor, shops, restaurants and coastal attractions nearby. Rooms are designed for comfort and practicality, featuring mini-fridges, flat-screen TVs with cable, air conditioning, free wireless internet and personal amenities. Guests can unwind with a swim in the heated outdoor pool or relax in the hot tub after a day on the water. Pet-friendly rooms make it easy to travel with four-legged companions.